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Software

VARPRISM: incorporating variant prioritization in tests of de novo mutation association

Mary Anne Karren / September 21, 2016

Vcfanno: fast, flexible annotation of genetic variants.

Mary Anne Karren / June 1, 2016

Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA profiling

Mary Anne Karren / May 27, 2016

Wham: Identifying Structural Variants of Biological Consequence

Mary Anne Karren / December 1, 2015

Efficient genotype compression and analysis of large genetic-variation data sets.

Mary Anne Karren / November 9, 2015

UCGD investigator Aaron Quinlan and his team have released GQT, a software tool for exploring and querying large data sets of thousands to millions of genomes.

Cas9-chromatin binding information enables more accurate CRISPR off-target prediction

Mary Anne Karren / October 15, 2015

SpeedSeq: ultra-fast personal genome analysis and interpretation

Mary Anne Karren / August 10, 2015

Toolbox for mobile-element insertion detection on cancer genomes

Mary Anne Karren / February 12, 2015

Extending reference assembly models.

Mary Anne Karren / January 24, 2015

Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes.

Mary Anne Karren / January 16, 2015

bam.iobio An Online Alignment File Inspector

bam.iobio: a web-based, real-time, sequence alignment file inspector.

Brett / December 11, 2014

Population-based structural variation discovery with Hydra-Multi.

Mary Anne Karren / December 2, 2014

Poretools: a toolkit for analyzing nanopore sequence data

Mary Anne Karren / December 1, 2014

Toolbox for mobile-element insertion detection on cancer genomes.

Mary Anne Karren / October 15, 2014

Tangram: a comprehensive toolbox for mobile element insertion detection.

Mary Anne Karren / September 16, 2014

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CONTACT INFORMATION

Nodira Codell, MPA

nodira.codell@genetics.utah.edu

801.581.7405

Utah Center for Genetic Discovery
15 N 2030 E #7145
Salt Lake City, UT 84112