MOSAIK: a hash-based algorithm for accurate next-generation sequencing short-read mapping. Mary Anne Karren / March 5, 2014
SSW library: an SIMD Smith-Waterman C/C++ library for use in genomic applications. Mary Anne Karren / December 4, 2013
BamTools: a C++ API and toolkit for analyzing and managing BAM files Mary Anne Karren / April 14, 2011
Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome Mary Anne Karren / March 22, 2010